Web page for assigning taxonomy of microorganisms.
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Apr 28, 2017 - JavaScript
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dna
Here are 1,191 public repositories matching this topic...
There are many methods to analyze cell nuclei, but few can detect the presence of DNA damage, without labeling proteins. We have developed a process to detect and classify cell nuclei in the presence of DNA damage. This method uses the morphology of DNA-associated histone proteins, without proteins that specifically label or localize to sites of…
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Oct 2, 2020 - Jupyter Notebook
R library for graphical and numerical representation of the DNA/RNA sequences.
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Sep 15, 2021 - R
Demo version of mardyr2 app hosted on shiny.io
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Nov 11, 2021 - R
This repository have the implementation of a string reconstructor using Bruijn graphs and eulerian path. This problem is very important in bioinformatics, because it is used to reconstruct the DNA sequence from a set of k-mers.
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Aug 3, 2024 - Python
A framework for assembling a genome using an overlap graph, a de Bruijn graph using an ML component
data-science machine-learning biology graphs overlap dna data-analysis logistic-regression genome-assembly de-bruijn-graphs dna-sequences overlap-graph
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Jun 14, 2025 - Jupyter Notebook
I'm currently getting started on Python. This is a small project to train my coding skills. Started on 15/04/2026
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Apr 16, 2026 - Python
Snakefiles for dsDNA based on MARTINI website tutorial and a new example for a ssDNA.
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Jan 30, 2019
An easy fragment of code to read in fasta format files
python bioinformatics proteins datascience dna fasta dataanalysis bioinformatics-tool colaboratory nucleicacid fragmentcode
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Aug 19, 2022 - Jupyter Notebook
TrueDNA is a comprehensive and powerful computational biology project focused on DNA prediction and DNA replication. This GitHub repository serves as a central hub for the TrueDNA project, tools, and resources for researchers, computational biologists, and AI enthusiasts working in the field of artificial intelligence and genomics.
machine-learning deep-learning computational-biology artificial-intelligence dna human-computer-interaction humanoid dna-replication dna-processing dna-prediction true-dna
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Jun 24, 2023 - Python
The aim of this Python project is to circularize a plasmid by optimizing the values of a table calculating the plasmid's 3D trajectory. To achieve this, 2 algorithms are used and compared: simulated annealing and genetic algorithm.
python pytest dna simulated-annealing genetic-algorithms optimisation-algorithms heuristic-search-algorithms pytest-cov
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Sep 15, 2024 - Python
My old bioinformatics ~/bin folder in Linux, full of personal scripts, etc.
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Jul 9, 2024 - Perl
DNA sequence alignment and marking tool written in python
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Mar 30, 2025 - Python
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