Demonstration of AI review of existing functional annotations

Source ontology files for the Gene Ontology

This repository hosts the tracker for issues pertaining to GO annotations.

End-to-end NGS variant calling and functional annotation pipeline for Limulus polyphemus using GATK and SnpEff, with biological interpretation of high-impact immune and metabolic variants.

Human gene annotations for the oncology domain

Annotate the ruff sandpiper (Calidris pugnax) reference proteome with GO, KEGG, PFAM and other information using various bioinformatics tools and databases.

Graph-based modeling environment for biology, including prototype editor and services

A lightweight R package for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using MetaSTAARlite pipeline

This is the digital version of my master project's logbook that is created by using Streamlit Python package to document all the command lines and codes that I ran to do my project so that other researchers can later reproduce the exact same analysis results

AmiGO is the public interface for the Gene Ontology.

STAAR Pipeline for Analyzing Whole-Genome/Whole-Exome Sequencing Data in PheWAS (PheWAS Version of STAARpipeline)

Comprehensive overview of genome annotation processes, including key steps, tools, and databases used for structural and functional annotation.

Pipeline for de novo genome assembly and annotation of the earthworm Lumbricus terrestris.

ATLAS - Three commands to start analyzing your metagenome data

UniProt Id Mapping through API

This project focuses on the hybrid genome and transcriptome analysis of compost-derived fungal isolates with bioplastic-degrading potential. It delivers high-quality Nanopore + Illumina assemblies, functional annotation, and RNA-Seq profiling to identify PLA/PHA-degrading enzymes supporting environmental biotechnology.

Annotate PICRUSt2 functional IDs (KO, EC, Pfam, etc.) using description mapfiles

Fast genome-wide functional annotation through orthology assignment

In this module, you will learn how to use a Nextflow pipeline to assemble and annotate a novel transcriptome using RNA-seq data

Exploratory Framework for Genotype-Phenotype Prediction