Python3 wrapper for parallelized gene prediction using Prodigal

scripts associated with yam genome assembly

Deep learning based method called hist2RNA to predict the expression of genes using digital images of stained tissue samples

Scans fasta sequences for putative viruses - uses prokka, blast, and hhpred to predict ORFs and gene products

The AugusMake pipeline is a Snakemake-based workflow for generating gene annotations using the Augustus software. AugusMake can perform gene predictions using any combination of the three methods: ab initio, with extrinsic hints, or by training a new species.

ncRNA identification, annotation and functional prediction

Comprehensive genome annotation pipeline for plant combining EVM/PASA, GETA, AUGUSTUS and Helixer with semi-supervised filtering for high-quality gene models.

A toolkit for identifying gene homologs in closely related species.

Prediction of metastasis sites for breast cancer cells

This project deals with predicting the location of a gene in the human genome based off experimental data

EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format

Pogigwasc gene prediction of Loxodes magnus genome

automatically create GLIMMER training materials from GenBank records

🔬🚀Prokaryotic gene prediction using Shine-Dalgarno motif and reading frame detection🧬🦠

🔮🧬 Gene prediction tool