Genome annotation with AUGUSTUS
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Aug 15, 2025 - C++
#
genome
Here are 28 public repositories matching this topic...
🔬 Assemble large genomes using short reads
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Mar 27, 2025 - C++
Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
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Oct 15, 2025 - C++
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
science c-plus-plus bioinformatics genome graph assembler scaffold oxford-nanopore 10xgenomics pacbio-data nanopore-sequencing
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Nov 6, 2024 - C++
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
bioinformatics genome taxonomy metagenomics classification fasta fastq metagenomes dna-sequences short-read-mapper read-mapping metagenomic-analysis metagenomic-classification genomic-data-analysis bioinformatics-algorithms long-reads metagenomic-data refseq ncbi-refseq bioinformatics-tool
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May 26, 2025 - C++
Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly
genome hpc overlapping genome-assembly hpc-applications kmer-counting longread spgemm longread-aligner combblas
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Jun 11, 2024 - C++
📚Bioinformatics Technology Lab common code library
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Dec 17, 2025 - C++
Jointly characterizing epigenetic dynamics across multiple cell types
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Apr 8, 2020 - C++
Fast Bayesian Hidden Markov Model with Wavelet Compression
machine-learning hmm bioinformatics statistics time-series genomics genome statistical-inference segmentation bayesian-inference wavelet hidden-markov-model bayesian-data-analysis genome-analysis bayesian-statistics hidden-markov-models time-series-analysis wavelets wavelet-transform wavelet-compression
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Jan 24, 2020 - C++
Pipeline to prepare alignments for visualization with ACT (goo.gl/1T28jX) and for locating possible inter-chromosomal re-arrengments/misjoints
visualization bioinformatics pipeline genome mapping scaffold dna alignment circos synteny act bioinformatics-analysis chromosome contigs assemblies smalt misjoint rearrengment inter-chromosomes minimap2
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May 24, 2020 - C++
(Class) Student assignment project (Bioinformatics)
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Jan 27, 2017 - C++
Comparing 3' single-end sequencing for genome and txome
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Aug 1, 2017 - C++
HiSIF: Genome-wide chromatin interactions identify characteristic promoter-distal loops
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Sep 27, 2024 - C++
Letter set generator and sequencer read simulator
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Nov 27, 2016 - C++
🌿🫐 Bramble: project spliced genomic alignments into transcriptomic space
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Dec 5, 2025 - C++
Software for Rapid Analyses of Human Copy Number Data
bioinformatics genomics genome copy-number-variation genotype karyotype copy-number x-chromosome y-chromosome autosome
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Aug 14, 2025 - C++
The web genome viewer is live at https://icemduru.github.io/listeria_ro15_transcript/
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Oct 4, 2022 - C++
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