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genome-analysis

Here are 12 public repositories matching this topic...

PalMuc / 2Tethya_genomes

The genome of the contractile demosponge Tethya wilhelma

genome genome-annotation genome-analysis genome-assembly metazoa porifera sponges

Updated Jun 24, 2024
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NIGMS / Intro-to-Pangenomics

This repository provides a comprehensive module on graphical pangenomics, guiding users through building, indexing, mapping, and visualizing pangenome graphs. The module runs on Google Cloud Platform using Jupyter notebooks and includes tools like PGGB, vg, BLAST, and Bandage.

bioinformatics gcp computational-biology population-genomics variant-calling high-throughput-sequencing genome-analysis genome-assembly illumina-sequencing read-mapping pangenomics genome-mapping pangenome-graph

Updated Jun 6, 2025
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miamib34ch / HSE-Bioinformatics

Practical and home works in the discipline Bioinformatics.

python bioinformatics snps phylogenetic-trees hi-c genome-annotation histone-modifications rna-seq-analysis genome-analysis genome-assembly sequence-alignment quadruplexes gene-prediction single-cell-rna-seq genetic-map-visualization chromhmm methylation-analysis

Updated Sep 25, 2023
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dhbrand / drought_metagen

Analysis of drought metagenomic data using ENNB methods

metagenomics genome-analysis maize

Updated Jul 3, 2018
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SPEAR-Reports

m-crown / SPEAR-Reports

A repository for viewing and requesting SPEAR reports on lineages/genomes of interest

data-visualization genome-analysis sars-cov-2

Updated Oct 26, 2024
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kalilamali / ucm_genomes_and_genome_analysis

R code in R Markdown used for ucm genomes and genome analysis course

r bioconductor rmd transcriptomics genomes genome-analysis epigenomics

Updated Feb 16, 2024
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EngqvistLab / yeast_xylanase

A bioinformatic analysis was carried out with the goal of identifying carbohydrate-active enzymes in 332 published yeast genomes.

tree enzyme wood genome-analysis carbohydrates yeast biomass enzyme-function yeastgenome carbohydrate-utilisation

Updated Feb 19, 2021
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rustcodepro / genomeassembly-pacbiohifi

pacbioHifi genome assembly benchmarks

bioinformatics bioinformatics-data genome-sequencing genome-analysis genome-assembly pacbio-data genome-alignment pacbio-sequencing

Updated Oct 4, 2024
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bitdessin / PyDAIR

PyDAIR: Python library for diversity analysis of immune repertoire

bioinformatics immunology genome-analysis

Updated Jan 26, 2021
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rustcodepro / arabidopsis-maf-cap-acccession

phylogenomics analysis for arabidopsis maf-cap genes

bioinformatics phylogenomics genome-analysis bioinformatics-analysis arabidopsis phylogenomics-pipeline arabidopsis-thaliana

Updated Aug 17, 2024
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wurmlab / genomicscourse

For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics

education bioinformatics population-genomics genome-analysis genome-assembly practicals qmul

Updated Oct 1, 2024
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mauriceling / bactome

Toolbox for Studying Bacteria, Archaea, and Complex Taxons

python bioinformatics proteomics statistical-genetics genome-analysis bioinformatics-scripts

Updated Mar 30, 2023
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