A useful python package for working on genomic coordinates.
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Feb 25, 2021 - Python
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genome-analysis
Here are 188 public repositories matching this topic...
A library of functions with the goal of mapping nucleotide-containing FASTA files for protein encoding ORFs as well as a computational analytics research paper on said functions
python genome proteins protein data-analysis fasta orfs genome-analysis orf genome-mapping sars covid-19 covid covid19 sars-cov-2 covid19-data protein-encoding proteinblast
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Mar 25, 2022 - Jupyter Notebook
This code compares the theoretical and practical length distributions of fragments.
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Mar 23, 2022 - MATLAB
viterbi-algorithm computational-biology gene-expression smith-waterman alternative-splicing gradient-descent differential-expression gillespie genome-analysis gradient-descent-algorithm bowtie2 differential-analysis single-cell-genomics gillespie-algorithm single-cell-analysis gradient-descent-implementation genome-alignment viterbi-decoder smith-waterman-alignment differential-expression-analysis
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Dec 21, 2019 - Jupyter Notebook
MAGset is a tool to analyze and compare MAGs of known species
mag metagenomics genome-annotation genomes genome-analysis genome-assembly metagenomic-analysis metagenomic-pipeline
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Jul 10, 2024 - Java
MjCyc Tier 2 PGDB at BioCyc
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Jan 25, 2025
C# web tool for reading GFF3 files, filtering, ordering, extracting information into Excel, GFF3 files, CDS files, and comparing GFF3 data with FASTA and CDS files.
bioinformatics genome gff3 cds fasta genome-analysis bioinformatics-analysis gff3-files excel-export bioinformatics-tool gff3-format fasta-files cds-files gff3-export cds-export gff3-tools genome-tools
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Dec 30, 2023 - ASP.NET
Viral genome assemble and characterisation
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Oct 17, 2023 - Python
Genomic data manipulation tool
bam-files bioinformatics genomics genome genetics microarray wgs genome-analysis whole-genome-sequencing sam-files cram-files
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Oct 6, 2024 - Python
Scrapes all the results of all the genome analysis performed by MiGA Online web tool and wirte them in a file.
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Feb 1, 2022 - Python
MRA, A Novel Multi-head Algorithm to Discover all Tandem Repeats in One Scan of DNA Sequences.
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Feb 2, 2023 - C
Aphrocallistes vastus genome
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Oct 12, 2023 - Shell
Simple Method to Detect Compositional Changes in Genomic
bootstrap machine-learning regression genome-analysis dna-sequences nonparametric-statistics change-points
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Nov 28, 2024 - Fortran
Identification of organisms from a stream of DNA sequences
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Jan 31, 2017 - C++
ECE358 Exercise - Finding Maximal Matches in Genome Sequences
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Sep 20, 2014 - C++
NLP project that uses CORD-19 Dataset to create knowledge graph based on data from 1,000,000 scholarly articles about Covid-19.
nlp spacy knowledge-graph nlp-machine-learning nlp-keywords-extraction genome-analysis networkx-graph covid-19 cord-19-dataset
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Aug 3, 2023 - Jupyter Notebook
Introduction to Computational Biology Final Project
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Mar 6, 2025 - Python
Modular bioinformatics toolkit for sequence analysis, genomic data parsing, machine learning, and visualization all in one package.
python data machine-learning bioinformatics analysis computational-biology bioinformatics-pipeline genome-analysis
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Aug 10, 2025 - Python
The genome of the contractile demosponge Tethya wilhelma
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Jun 24, 2024 - HTML
Generate heatmap plots from genomic BigWig data
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May 3, 2024 - Python
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