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StrandWeaver is an AI/ML-powered genome assembler that combines multi-technology sequencing data (Illumina, ONT, PacBio HiFi, ultra-long reads, and Hi-C) in a unified graph framework with neural network-guided path resolution, haplotype-aware phasing, and assembly-time structural variant detection.
Viral (meta)-genome assembly pipeline.
⚡ Speed up 3D Gaussian Splatting training to under 100 seconds while ensuring high-quality rendering with FastGS.
Interactive visualizer ad manual scaffolder of Hi-C contact maps. All-in-one Java-based implementation.
viral-ngs: command line tools and wrappers for processing raw viral genomic data
🌳 Scalable ancestry from genomic data
A comprehensive telomere annotation tool for genome assemblies and graphs.
⛓️ Construct a Physical Map from Linked Reads
Entheome Genome Assembly Pipeline (EGAP)
Genomic Analysis of Bacterial Isolates
Visualization tool for (meta)genome assembly graphs
Genome assembly and annotation pipeline for Akodon using 10x Genomics Supernova and BRAKER-based gene prediction on HPC.
De novo genome assembly for long reads using an overlap graph
A modern, web-based Hi-C contact map viewer and genome assembly curation tool
⛓ Correct misassemblies using linked AND long reads
Decision-support framework for adaptive early stopping in Oxford Nanopore genome polishing.
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