🧬 湿实验室友好的本地 RNA-seq 分析网页工具：一键安装，浏览器里完成 比对→差异基因→GO/KEGG 富集，数据不出本机 | Local-first RNA-seq web app for wet labs (Streamlit + WSL)
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Aug 27, 2026 - Python
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hisat2
Here are 8 public repositories matching this topic...
Containerized Snakemake workflow for RNA-seq: HISAT2 + featureCounts gene counts, Salmon transcript quantification, and comprehensive QC (FastQC, fastp, Picard, Qualimap, RSeQC, MultiQC). On-demand index building; Docker & Apptainer ready.
docker workflow bioinformatics quality-control rna-seq snakemake ngs gene-expression multiqc transcriptomics hisat2 salmon featurecounts apptainer
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Aug 7, 2026 - Python
A front-end GUI to map NGS DNA sequencing data using HISAT backend tool. This software offers robust seamless queueing of the mapping operations along with parameter memory for quick and easy customization.
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Mar 17, 2017 - Python
End-to-end RNA-seq analysis pipeline — from raw FASTQ files to differential expression results. Python + R + DESeq2 + Streamlit.
python bioinformatics r genomics bioinformatics-pipeline deseq2 hisat2 fastq differential-expression rna-seq-pipeline streamlit
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May 25, 2026 - Python
snakemake files of the tuxedo v2 pipeline from Pertea et al 2016
rna-seq snakemake r conda expression rnaseq hisat2 samtools conda-environment differential stringtie tuxedo2 ballgown rskittlebrewer smsk
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Apr 5, 2022 - Python
Reproducible bulk RNA-seq workflow with a Python control plane, nf-core/Nextflow execution, Salmon or HISAT2-featureCounts backends, DESeq2, and GO/KEGG GSEA.
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Sep 24, 2026 - Python
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