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inflammation

Here are 19 public repositories matching this topic...

GNtem2 / Mining-Literature-Atherosclerosis

Search PubMed for Gene associations with Atherosclerosis

graph-theory gephi inflammation atherosclerosis gene-associations

Updated Jan 17, 2020

SaradhaVenkatachalapathy / Cell_Shape_TNF_alpha_PNAS_2017

Analysis in the paper Mitra et.al. PNAS 2017.

microarray inflammation filament-detection cell-shape

Updated Jul 19, 2020

inuritdino / HyperInflamDataProcessing

scRNA-seq datasets to support Jung et al, Sci Adv, 7(6): eabe5735, 2021. DOI: 10.1126/sciadv.abe5735

scrna-seq scrna-seq-data scrna-seq-analysis inflammatory inflammation covid-19

Updated Feb 16, 2021
R

voduchuy / Kalb_Vo_2021

This repository contains the code used for the data modeling and analysis presented in Kalb, Vo et al. Scientific Reports 11, 2021.

transcription inflammation stochastic-reaction-networks

Updated Jul 30, 2021
Jupyter Notebook

ocimido

sap218 / ocimido

An ontology for ocular immune-mediated inflammatory diseases

owl ontology disorder synonyms disease tf-idf diseases ophthalmology inflammatory inflammation ocular biomedical-ontologies layman-terms patient-voice

Updated Oct 15, 2021

sap218 / coid

Combined Ontology for Inflammatory Diseases

owl ontology disorder disease phenotype phenotypes diseases disorders inflammatory inflammation biomedical-ontologies

Updated Apr 20, 2022

sap218 / PatientINF

PatientINF embedding models - with forum extraction and model building scripts

nlp word2vec patient forum embeddings fasttext mimic-iii vectorisation inflammation clinicalbert

Updated Apr 20, 2022
Python

fanzhanglab / TteK

Code for Jonsson*, Zhang*, et al, TteK (Granzyme K+ CD8 T cells), Science Translational Medicine, 2022: the core population of inflamed human tissue-associated CD8 T cells.

tcr-repertoire immunogenomics tcell single-cell-omics inflammation rheumatoid-arthritis

Updated Jul 1, 2022
Jupyter Notebook

Crit-Lab / COVID_clustering

Code and data for the manuscript "Transcriptomic clustering of critically ill COVID-19 patients"

clustering transcriptomics critical-care inflammation covid-19 lung-injury

Updated Sep 18, 2022
R

PiotrTymoszuk / simmun

Metabolism of serum neurotransmitter precursors after COVID-19

linear-regression metabolism psychometrics robust-linear-regression inflammation covid-19 sars-cov-2 neurotransmitters

Updated Jul 19, 2023
TeX

DRNOAHBIOTECH / NeuroRG

Scripts for the research paper "Unveiling CNS Cell Morphology with Deep Learning: A Gateway to Anti-Inflammatory Compound Screening"

image ensemble vit cnns inflammation

Updated Dec 20, 2024
Jupyter Notebook

EpistemologistIoneuroscientist / ioneurosciencehubfootnoe.Intersection

#ioneurosciencehubfootnoteIntersection=) Exploring the intersection of vitamin B12 and cognitive decline in older adults.

function neuroscience health psychology stress-test immunology sleep wellness immune holisticon inflammation osteopathy mind-connection gut-brain-axis

Updated Feb 27, 2025

caveman2025 / The-Modern-Neanderthal-Sensitivity-Theory

Human survival post-LGM relied on adaptation, cooperation, and innovation. Neanderthal and Denisovan genes shaped immunity and metabolism, but uniform modern diets clash with these traits, fueling chronic disease. Embracing diversity can drive health and resilience.

genetics biology evolution autism anthropology adhd neanderthal heds pots inflammation chronic-diseases autoimmune-disease mcas highly-sensitive-person

Updated Jun 3, 2025
Python

boutroslab / Supp_Funk_2021

analysis single-cell aging inflammation organoids intestine

Updated Sep 17, 2025
HTML

The-6-Works-of-Human-Artificial-and-Synthetic-Systems-Re-Tuning-by-Dustin-Sprenger

dustinsprenger / The-6-Works-of-Human-Artificial-and-Synthetic-Systems-Re-Tuning-by-Dustin-Sprenger

synthetic-biology information-theory neuroscience thermodynamics computational-geometry algebraic-topology rgb-color cybernetics complex-systems microfluidics microbiota philosophy-of-science antioxidants developmental-psychology inflammation bioelectronics emergentism

Updated Dec 15, 2025

strathlab-data / DII

A Python package for calculating the Dietary Inflammatory Index (DII) from nutrient intake data

python health public-health epidemiology nutrition nhanes dietary epidemiology-analysis inflammation dgd dietary-assessment dii epidemiology-methods dietary-inflammatory-index

Updated Dec 18, 2025
Python

limabravoecho-collab / hypothesis-intrinsic-autism-and-immune-mediated-deurodevelopmental-disorder

Hypothesis Intrinsic Autism and Immune-Mediated Neurodevelopmental Disorders

Updated Dec 30, 2025

zareenrahman / Blood-Transcriptomics-PrecisionMedicine

Transcriptomic profiling of blood and brain metastasis samples for cell-type-specific analysis and precision medicine.

blood gene-expression transcriptomics single-cell precision-medicine inflammation neurodegeneration

Updated Feb 3, 2026
Jupyter Notebook

stizox45 / hypothesis-intrinsic-autism-and-immune-mediated-deurodevelopmental-disorder

🧠 Explore the link between intrinsic autism and immune-mediated neurodevelopmental disorders to advance understanding and improve accommodations.

biomarkers electromagnetic-fields inflammation oxidative-stress environmental-health preventive-medicine neurodevelopment developmental-toxicology iron-metabolism prenatal-exposure synergistic-toxicology neurotoxicology research-hypothesis socioeconomic-health heavy-metals

Updated Feb 6, 2026

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