SIRV disease model of the impacts of vaccination on a hypothetical influenza outbreak, based on a recreation of the paper, Impact of influenza vaccine-modified infectivity on attack rate, case fatality ratio, and mortality (Nah et al. 2020)

Kieran et al. 2024 - Communication Biology - R code for machine learning in influenza infected ferrets

Data repository for past pandemics during 1990 - 2023 with available time-series and meta-data.

Source code and data files accompanying "Parallel evolution between genomic segments of seasonal human influenza viruses reveals RNA-RNA relationships" by Jones et al eLife 2021.

Examples of Molecular Phylogenomics figures created from self-taught usage of MEGA-X software.

Analysis project looking at Medicare flushot vaccination rates from 2013-2019, with attempts to infer how this population would respond to required seasonal covid boosters. All relevant code is in the R Markdown file, overall analysis and conclusions are in the pdf file. All data used is publicly available from CMS and the Census Bureau.

Code repository for published manuscript

Deployable code for the influenza webapp.

Influenza A PB1 FASTA QC, alignment (MAFFT), and country-balanced sampling (R)

ML system predicting flu outbreaks 1-4 weeks ahead with 99.3% accuracy. XGBoost | CDC Data | Rutgers AI Course

Code and data associated with Billings et al., "High dose inactivated influenza vaccine inconsistently improves heterologous antibody responses in an elderly human cohort", JID 2025.

Understanding spatiotemporal clustering of seasonal influenza in the United States

Competition entry: DataDriven_Flu

This project analyzes the weekly data on Influenza Type A and Type B cases in the US for the period 2023-24.

Kieran et al. (under revision) - PLoS Computational Biology

Shiny-based, Dockerized visual tool for simulating epidemic dynamics with adjustable parameters.

Stochastic integration of influenza dynamics.

Code repository associated with Brierley et al., 'An AI for AI..'

TEMP Name - Repository for IBV 2020-2024 Surveillance Manuscript