Dockerized BEASTvntr : a package for BEAST2 implementing phylogenetic analysis for VNTR or Microsatellites

Dockerized lobSTR: a short tandem repeat profiler for next generation sequencing data

Population genetics using microsatellites for different salmonid species

Python code to convert STR length data to number of repetitions

Supporting code for the microsatellite genotyping paper introducing CHIIMP

Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.

PERF is an Exhaustive Repeat Finder

Microsatellite genotyping

An Open Source Program that allows users to interact with a Spacecraft in a lab environment, pre-launch.

This repository contains all input files and analyses for the article "No effects of fishery collapse on the genetic diversity of the Gulf of California Corvina, Cynoscion othonopterus (Perciformes: Sciaenidae)"

De novo repeat inference from long reads

Ensembl VEP plugin that generates HGVS notation for Short Tandem Repeats (STR)

Application for polymorphic SSRs loci identification in genomic sequences

Population Genetics in Julia

A complete SSR population genetics toolkit for any species. Includes data cleaning, UPGMA clustering, PCoA, STRUCTURE formatting, STRUCTURE barplot visualization, and supporting scripts for reproducible microsatellite population analyses.

A macOS application for microsatellite genotyping and chromatogram management.

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

SSR Based Comparitive Genomics API

Computational, High-throughput Individual Identification through Microsatellite Profiling