Computational, High-throughput Individual Identification through Microsatellite Profiling

SSR Based Comparitive Genomics API

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

A macOS application for microsatellite genotyping and chromatogram management.

A complete SSR population genetics toolkit for any species. Includes data cleaning, UPGMA clustering, PCoA, STRUCTURE formatting, STRUCTURE barplot visualization, and supporting scripts for reproducible microsatellite population analyses.

Population Genetics in Julia

Application for polymorphic SSRs loci identification in genomic sequences

Ensembl VEP plugin that generates HGVS notation for Short Tandem Repeats (STR)

De novo repeat inference from long reads

This repository contains all input files and analyses for the article "No effects of fishery collapse on the genetic diversity of the Gulf of California Corvina, Cynoscion othonopterus (Perciformes: Sciaenidae)"

An Open Source Program that allows users to interact with a Spacecraft in a lab environment, pre-launch.

Microsatellite genotyping

PERF is an Exhaustive Repeat Finder

Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.

Supporting code for the microsatellite genotyping paper introducing CHIIMP

Python code to convert STR length data to number of repetitions

Population genetics using microsatellites for different salmonid species

Dockerized lobSTR: a short tandem repeat profiler for next generation sequencing data

Dockerized BEASTvntr : a package for BEAST2 implementing phylogenetic analysis for VNTR or Microsatellites