Gibbs 3.2 formerly located at http://ccmbweb.ccv.brown.edu/gibbs/gibbs.html
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Jul 15, 2019 - C
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motif-discovery
Here are 85 public repositories matching this topic...
Re-implementation and some initialization analysis of Multiple EM for Motif Elicitation (MEME).
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Jul 10, 2023 - Python
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Apr 22, 2017 - Python
A tool to search for motifs within the whole genome or regions of interest
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Feb 10, 2019 - Python
GIMSAN: motif-finder with biologically realistic and reliable statistical significance analysis
bioinformatics computational-biology transcription-factor-binding gibbs-sampling gibbs-sampler motif-discovery motif-analysis motifs
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Jan 11, 2016 - C
The repository stores files that were used to perform Tbx5 transcription factor analysis with house mouse heart cells.
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Jun 22, 2022 - TeX
Docker image to easy run meme suite in web mode http://meme-suite.org/
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Oct 26, 2020 - Dockerfile
eBM: Enhanced BRAIN-MAGNET convolutional neural network modeling non-coding regulatory elements enhancer activity in human neural stem cells
genomics pytorch convolutional-neural-network genetic-variants motif-discovery neurogenomics starr-seq enhancer-prediction explainable-ai mpra neurodevelopmental-disorders modisco deeplift ncre pytorch-lightning shapley-additive-explanations apple-silicon variant-prioritization noncoding-genetic-variation
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Nov 23, 2025 - Jupyter Notebook
Details application of UniDip to the problem of biologic motif discovery. We find that UniDip is able to preprocess DNA sequences such that MEME is able to find motifs 70% faster.
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Jun 9, 2018 - HTML
Evaluate de novo motif finding tools
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Jun 14, 2021 - Python
My solutions (in Python) for problems from the Coursera course "Finding Hidden Messages in DNA (Bioinformatics I)" by UC San-Diego.
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Jun 4, 2025 - Python
Classify transcriptional factor motifs into true motifs and false motifs
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Nov 15, 2017 - Python
C++ Codes for the DNA Sequence Motif Discovery Using Greedy Construction Algorithm Based Techniques
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Dec 22, 2021 - C++
Bioinformatics- High-throughput data Analysis project
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Aug 1, 2022 - R
MapReduce-based Algorithm for Motif Search
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May 19, 2023 - Java
An exhaustive GPU algorithm written in C++ to reveal degenerate oligonucleotide motifs written in the 15-letter IUPAC code
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Jul 16, 2023 - C++
Transceiver Framework: A framework for concurrent multi stage processing of data & MDP: An online motif detector and predictor embedded in the transceiver framework.
json framework stream concurrency motif pipeline-framework stream-processing customizable language-model parallel-processing concurrent-queues motif-discovery time-series-analysis multithreaded motif-analysis predictor time-series-prediction time-series-forecasting data-stream-mining motif-detector
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Feb 10, 2019 - Java
Python toolkit for advanced genomic analysis, motif discovery, and protein sequence exploration
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Oct 16, 2025 - Python
Motif finding algorithms implementation and a bit trying of enhancement
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Jun 29, 2024 - Jupyter Notebook
A contrast motif discovery approach for analyzing discrete sequences.
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Jul 30, 2020 - Python
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