Systematic evaluation of hallucination risks in Large Language Models (GPT-4, Claude 3, Gemini Pro) for clinical proteomics and mass spectrometry interpretation. Production-ready detection framework with comprehensive benchmarks.

A Python package that aims to characterise the dynamics of local chemical environments from Molecular Dynamics trajectories of proteins and other biomolecules. Public mirror of https://gitlab.jsc.fz-juelich.de/slbio/speadi.

Topological data analytic approach for discovering biophysical signatures in protein dynamics

Superposition-based Protein Embedded CA SC score

protclust is a Python library for protein sequence analysis that integrates MMseqs2 for fast clustering and provides tools for creating robust machine learning datasets. It offers cluster-aware data splitting to prevent sequence similarity bias in model evaluation, along with comprehensive protein embedding capabilities for feature generation.

🧬 Design proteins efficiently with ProteinDJ, a Nextflow pipeline integrating key software tools for binder design and parameter optimization.

Python tool for analyzing protein point mutations. Calculates changes in molecular weight, charge, and hydrophobicity. Classifies mutations by severity and generates visualizations and HTML reports.

🧬 AI-powered protein structure-function analysis tool with 8-state secondary structure prediction, functional region identification, and interactive visualization. Built for researchers, educators, and students to understand how protein structure drives biological function.

Python toolkit for advanced genomic analysis, motif discovery, and protein sequence exploration

🧬Protein Functions Prediction through Amino Acids Sequences🧬

A Python tool to compute physicochemical properties of proteins from FASTA files. Supports molecular weight, isoelectric point (pI), instability index, aliphatic index, and GRAVY score using Biopython.

Stand Alone version of ConSurf with better amino acid analysis - (installation + database + usage + analysis) - Fork of leezx/ConSurf-StandAlone

A full-stack bioinformatics website for searching, aligning, and visualising protein sequences by taxon.