[MICCAI 2023] MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation.

A pytorch implementation of 3D UNet for 3D MRI Segmentation.

PyTorch 3D U-Net implementation for Multimodal Brain Tumor Segmentation (BraTS 2021)

Brain Segmentation on MRBrains18

Neural network-based MRI preprocessing: Prep 🧠 images in seconds 🔥

Federated learning with homomorphic encryption enables multiple parties to securely co-train artificial intelligence models in pathology and radiology, reaching state-of-the-art performance with privacy guarantees.

PNH segmentation pipelines based on nipype

Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI

Volumetric MRI visualization and analysis tool for BraTS datasets. Converts NIfTI slices to 3D meshes using Marching Cubes algorithm with real-time tumor volume calculation.

[AAAI'20] Segmenting Medical MRI via Recurrent Decoding Cell (Spotlight)

Automatic segment and generate masks for any 3D medical images using SAM model without prompt

This is the official repository for Fast-nnUNet, a new fast model inference framework based on the nnUNet framework implementation.

A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.

TensorFlow implementation of our paper: "Automated detection of aggressive and indolent prostate cancer on magnetic resonance imaging [Medical Physics 2021]".

[Brainlesion 2022] Official PyTorch Code for Hybrid Window Attention Based Transformer Architecture for Brain Tumor Segmentation: Solution for FeTS 2022 Task 2

Pytorch implementation of the DWP with application to MRI segmentation

Official Implementation of ARACHNET: INTERPRETABLE SUB-ARACHNOID SPACE SEGMENTATION USING AN ADDITIVE CONVOLUTIONAL NEURAL NETWORK

Magnetic Resonance Images segmentation by Deep Neural Networks (Master Thesis)

This is a repository hosting all models detailed in the article Brain tumour segmentation with incomplete imaging data.

We segmented the Brain tumor using Brats dataset and as we know it is in 3D format we used the slicing method in which we slice the images in 2D form according to its 3 axis and then giving the model for training then combining waits to segment brain tumor. We used UNET model for training our dataset.