Algorithm for ultra-scale multiple protein sequence alignments: 3 million ABC transporters analyzed in 5 minutes and 18 GB of RAM.
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
Scalable long read self-correction and assembly polishing with multiple sequence alignment
High throughput tool for tall and wide multiple sequence alignment.
NEFF Calculator and MSA File Converter
⚙️TPMA: a two pointers meta-alignment tool to ensemble different nucleic acid multiple sequence alignment results
Mugsy - multiple whole genome alignment tool
🧬ReAlign-N: an integrated realignment approach for multiple nucleic acid sequence alignment, combining global and local realignments
do multiple nucleotide sequence alignment fast and accurately
Bioinformatics Toolbox
Multiple sequence alignment tool that builds on the concept of seed-and-extend algorithms
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 1.4
Sequence alignment algorithms in C++ for CB302 Molecular Biology: Needleman-Wunsch (global), Smith-Waterman (local), Star alignment (MSA). Dot-plot visualizations on real NCBI sequences.
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