Small tool to simulate AdapterContamination of NGS reads and evaluate the findings afterwards.

Genomic variants in HBase

Produce a report on a BAM file listing useful information

QReadSelector is a subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.

Apache Spark application for filtering and reporting clinically relevant variants

CloudEC is a MapReduce-based algorithm for correcting errors in next-generation sequencing big data.

A program which can assembing .fasta file generated by Next Generation Sequencing(NGS) de novo using De Bruijn Graph Algorithm, and can also choose to map(BLAST) the contigs to a reference sequence

The Clip&Merge Method for paired end read merging and adapter clipping, quality trimming and other FastQ operations.

STATegra EMS: an Experiment Management System for complex next-generation omics experiments

Micro-libraries for reading and writing genomic sequence data in various formats.

A library for manipulating bioinformatics sequencing formats in Apache Spark.

microRNA validation using Spark framework

Big Data tool for scalable short-read error correction

A Reliable and Fast Algorithm for Single Individual Haplotyping

A Universal Toolkit for Handling Sequence Data from Different Sequencing Platforms

sparkhit - analyzing large scale genomic data on the cloud

MiTools: yet another Next Generation Sequencing (NGS) data processing tool (based on MiLib)

MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data

The mitochondrial workbench