A simple pipeline to test some basic nextflow features.

Bayesian phylogenetic analysis

Nextflow pipeline to assemble genomes from long reads.

A Nextflow pipeline for performing bacterial RNA-Seq analysis without a reference genome.

A nextflow workflow to build referenceseeker DBs on the fly

Nextflow pipeline for targeted sequencing data.

An hello world pipeline to test nextflow installations.

Nextflow Scripts/Workflows for Bioinformatics

centriflaken

HLA typing pipelines in nextflow

A Nextflow pipeline for allele frequency analysis from pooled Illumina sequencing data

A Genome Annotation workflow for Eukaryotes

Advanced Training in Bioinformatics Workflows: Beginner - Intermediate level Bioinformaticians working with next-generation sequencing data in East-Africa.

Demultiplexing pipeline for sequencing data

modules for processing and analyzing single cell data using Nextflow

This repo contains pipeline implemented using the nextflow workflow management system for the analysis of genomics data

Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery

Atac-Seq pipeline