nucleotide-transformer

AI-powered eDNA classification platform using Nucleotide Transformer for marine biodiversity analysis - taxonomic classification, novelty detection, interactive mapping & rich analytics

Full weight-level fine-tuning of Nucleotide Transformer v2 50M on GenomicBenchmarks DNA tasks — leakage-free train/val/test protocol, multi-seed evaluation, reproducible figures.

DACON 제2회 Medical AI 5위/477팀 (상위 1%) — 유전체 언어모델 기반 변이 민감도 예측

Integrated/Expected gradients for DNA foundation models

Predict antomicrobial resistance (AMR) for a pathogen (Staphylococcus aureus) against an antibiotic (Cefoxitin) using encoder-only transformer given the genomic sequence of one of its genes (gene pbp4) as input.

Zero-shot SNV effect prediction with DNA language models (HyenaDNA, Nucleotide Transformer) benchmarked on BRCA1 saturation genome editing and ClinVar