OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …
A module with convenience functions for writing Python code that interacts with OMERO.
Browse your OMERO database from within napari.
BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
OMERO Docker compose example
Sphinx-based documentation for the Open Microscopy Environment
Experimental micro-service for implementing the Zarr spec over HTTP
An OMERO CLI plugin for creating transfer packets between OMERO servers.
Continuous integration tool for OME projects
OMERO.server production docker image
OMERO.web plugin for the Vitessce multimodal data viewer.
A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
NL‑BIOMERO delivers a full containerized stack to run OMERO together with the BIOMERO 2.0 framework. It provides Docker/Podman configurations and Compose files to deploy OMERO + BIOMERO subsystems (importer, analyzer, OMERO.web plugin, databases, and auxiliary services) — the recommended starting point for a FAIR‑oriented bioimaging setup.
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