SMIS: Single Molecular Integrative Scaffolding. A pipeline for scaffolding genome assemblies using long reads (PacBio, ONT)

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Pipeline to bin 10X, HiC, PacBio and ONT reads based on ancestry assemblies

Build highly accurate transcripts from long-read RNA data

Benchmarking for long-reads assembler

start shell scripts on hs8145x6 with full root privilege

Exploit Huawei ONT device, only support r019. You need to compile kernel module getshell.ko for r018 or r017 by yourself.

CatMOD is a CatBoost-based feature-concatenation model for RNA modification recognition from ONT DRS.

MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon data

A quick guide to create Docker images for the Scrappie, Flappie, and Bonito basecallers by ONT.

The analysis of shotgun metagenomic sequencing data generated from Oxford Nanopore Technology (ONT).

Subset of fast5 files contained in a fastq, BAM, or SAM file.

Custom Control Panel to manage Nokia ONT

Projeto para Provisionar ONU/ONT na OLT Nokia

Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq

ZNID-GPON-2424A-0ET

Analyses of Penter, Borji & Nagler et al., Nature Communications 2024

Unofficial client library to get data from Huawei router

GUI for inspecting POD5 files

Generates simulated ONT metegenomic samples based off existing microbiome sample abundances