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Comprehensive structural variant calling, filtering, annotation and consensus set generation from ONT's long read sequencing data

Analyses of Penter, Borji & Nagler et al., Nature Communications 2024

CatMOD is a CatBoost-based feature-concatenation model for RNA modification recognition from ONT DRS.

Filter BAM file based on read mean QV, implemented in Rust

Dual RNA-sequencing analysis of long-read ONT data obtained from vaginal swabs. The nextflow script seperates reads from human, Candida albicans and several bacteria causing bacterial vaginosis

Get L. pneumophila ST from long-read or hybrid assemblies.

Build highly accurate transcripts from long-read RNA data

Open source OLT Manager

Strukturierte Gegenüberstellung der Glasfaserverbindung im Vergleich zu herkömmlichen DSL-Verbindungen

A quick guide to create Docker images for the Scrappie, Flappie, and Bonito basecallers by ONT.

Paquete en Python que proporciona una interfaz basada en clases para conectar vía Telnet a un OLT Zyxel (modelo OLT1408A) y extraer información de las ONT (Optical Network Terminations) en estructuras de datos listas para serializar a JSON. Todo se realiza sin SNMP, únicamente mediante comandos Telnet y parseo de las salidas ASC

A comprehensive pipeline for detecting, characterizing, and visualizing recombinant AAV (rAAV) integration sites using Oxford Nanopore long-read sequencing data.

avantonder/assembleBAC-ONT is a bioinformatics pipeline that de novo assembles and annotates Oxford Nanopore (ONT) long-read sequence data.

Automated pipeline for bacterial genome assembly, annotation, and pangenome analysis from multiplexed Oxford Nanopore data . Includes quality filtering, assembly, polishing, serotype prediction, annotation, and visualization.

Pipeline to bin 10X, HiC, PacBio and ONT reads based on ancestry assemblies

Adaptive sampling BED helper tool for Oxford Nanopore sequencing. built on pybedtools (0.12.0) with chrom sizes from bioframe

Magnipore: Differential single nucleotide changes of ONT signals

Custom Control Panel to manage Nokia ONT

ZNID-GPON-2424A-0ET