Full-screen console debugger for Python

pdb++, a drop-in replacement for pdb (the Python debugger)

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

ChatDBG - AI-assisted debugging. Uses AI to answer 'why'

A simple tutorial about effectively using pdb

Working with molecular structures in pandas DataFrames

An open library for the analysis of molecular dynamics trajectories

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Schake, Bolz, et al. (2025), https://doi.org/10.1093/nar/gkaf361

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

A dependency-free cross-platform swiss army knife for PDB files.

pdb + Rich library

A Python API for the RCSB Protein Data Bank (PDB)

Remote vanilla PDB (over TCP sockets).

A fully-featured remote and preemptive debugger for python

Pdb and Vim integration

A Python script to download PDB files associated with a Portable Executable (PE)

Protein Secondary Structure predictor using Convolutional Neural Networks

pdbp (Pdb+): A drop-in replacement for pdb and pdbpp. To replace "pdb", add "import pdbp" to an "__init__.py" file.

The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..

NoPdb: Non-interactive Python Debugger