qc

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

R package for the MoTrPAC community

Methylation array preprocessing.

Bundle of Useful scRNA-seq Gating Tools Extending seuRat

Single Cell Multi-Omics Quality Control Toolkit

Fast and easy visualization of fMRI data quality using carpet plots.

A QC pipeline for SVs calls based on coverage and SNP calls

Cell Permeability analysis

summarising outputs of samtools stats with ATAC-seq qc in mind

An end-to-end scRNA-seq analysis pipeline processing raw PBMC data through QC, dimensionality reduction, and clustering, deployed as an interactive, production-ready R Shiny dashboard.

Phylogenetics pipeline: API request, filtering and QC, tree construction and visualization

Codes for exome sequencing class being taught by Tychele N. Turner, Ph.D.

Codes for genome sequencing class being taught by Tychele N. Turner, Ph.D.

Reproducible sleep diary data cleaning pipeline in R. Drops in your data — .rds or .csv — via a one-page config template, auto-detects and corrects timestamp errors with a documented human-in-the-loop review trail, and outputs TST/SOL/WASO/SE metrics with diagnostic figures.

🐲 DRAGEN workflow tidying 🔥

R-based ETL and quality control pipeline for ELAN annotation files used in infant motor behavior research

Interactive and dynamic representation of SeqWare Run Reports