DNA/RNA folding in Nim

Agente Inteligente Basado en Redes Neuronales Artificiales para la Identificación de los determinantes de la estadía de los pacientes de la UCI del HUAPA de Cumaná, estado Sucre

A gym environment for the research which apply the reinforcement learning algorithm to the RNA structure prediction

Tools For Computational Biology

Tool for analysing BLAST output for ncRNA sequences

Python bindings to use the historical GTFold library natively in the RNADB construction script and natively with Python3. See the WIKI pages for documentation and installation notes.

pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.

RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io

Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip

RNA folding and codon optimization in pure Rust

Julia interface to LinearFold RNA structure prediction programs: LinearFold, LinearPartition, LinearSampling, and LinearTurboFold

Julia interface to ViennaRNA for RNA structure prediction and analysis

Visualizes the secondary structure of RNA using Verna

CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data

Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding and attention map to match different types of downstream tasks.

Alignment of RNAs

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

Maven project for the bioinformatic application LoopMatcher (aka LASLO).