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structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference

Source code for "A universal framework for accurate and efficient geometric deep learning of molecular systems" (Nature Scientific Reports)

The list of tools and projects of the Laboratory of RNA Algorithms at IMol Polish Academy of Sciences

Calculating Tree Edit Distance for RNA Structures in Dot Bracket Notation

RiboNucleic Acid (RNA) Language Model

RNA Pseudoknotted Secondary Structure Prediction Using Strict Hierarchical Folding

Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

nucleic acid folding

Repo for the comradesOO R package. Designed for the analysis of RNA structural data obtained through RNA cross-linking and high-throughput sequencing experiments

SQUARNA benchmark data

RNA secondary structure prediction tool

MFE method for predicting the psuedoknotted secondary structures of RNA sequences.

RNA/DNA/PMO Pseudoknotted Secondary Structure Interaction Prediction Using Relaxed Hierarchical Folding

RNA Pseudoknotted Secondary Structure Prediction Using Relaxed Hierarchical Folding

locality-aware invariant Point Attention-based RNA ScorEr

Maven project for the bioinformatic application LoopMatcher (aka LASLO).

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

Alignment of RNAs

Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding and attention map to match different types of downstream tasks.