SQUARNA benchmark data

Julia interface to LinearFold RNA structure prediction programs: LinearFold, LinearPartition, LinearSampling, and LinearTurboFold

locality-aware invariant Point Attention-based RNA ScorEr

Repo for the comradesOO R package. Designed for the analysis of RNA structural data obtained through RNA cross-linking and high-throughput sequencing experiments

Agente Inteligente Basado en Redes Neuronales Artificiales para la Identificación de los determinantes de la estadía de los pacientes de la UCI del HUAPA de Cumaná, estado Sucre

DNA/RNA folding in Nim

RNA folding and codon optimization in pure Rust

Visualizes the secondary structure of RNA using Verna

A gym environment for the research which apply the reinforcement learning algorithm to the RNA structure prediction

Calculating Tree Edit Distance for RNA Structures in Dot Bracket Notation

🧬 Build and train small language models from scratch on AMD GPUs with ROCm, featuring tokenizer training, data prep, and Hugging Face deployment.

Python bindings to use the historical GTFold library natively in the RNADB construction script and natively with Python3. See the WIKI pages for documentation and installation notes.

Maven project for the bioinformatic application LoopMatcher (aka LASLO).

Tools For Computational Biology

Julia interface to ViennaRNA for RNA structure prediction and analysis

The list of tools and projects of the Laboratory of RNA Algorithms at IMol Polish Academy of Sciences

MFE method for predicting the psuedoknotted secondary structures of RNA sequences.

Tool for analysing BLAST output for ncRNA sequences