RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.

The DFO Salmon Ontology is a data stewardship and operational process ontology designed to provide a semantic framework for managing, integrating, and stewarding Pacific salmon data across Fisheries and Oceans Canada (DFO).

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

A dashboard visualizing Chinook salmon returns to the Fraser and Columbia Rivers and Southern Resident killer whales occurrence

Standard RNAseq analysis pipeline using snakemake.

Simple Snakemake RNA-Seq pipeline

Salmon Time

Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2

Snakemake workflow for Salmon quantification and FastQC quality controls

연어봇 - SalmonBot

Count your fastq-formatted rna-seq reads with Salmon

Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.