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Starred repositories

38 results for source starred repositories written in Shell
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Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Shell 111,748 22,852 Updated Jul 27, 2025

Run macOS VM in a Docker! Run near native OSX-KVM in Docker! X11 Forwarding! CI/CD for OS X Security Research! Docker mac Containers.

Shell 51,688 2,867 Updated Jun 6, 2025

💫 Toolkit to help you get started with Spec-Driven Development

Shell 45,992 3,946 Updated Nov 7, 2025

Conda recipes for the bioconda channel.

Shell 1,762 3,638 Updated Nov 7, 2025

Full-featured, open source mail server solution for mainstream Linux/BSD distributions.

Shell 1,715 243 Updated Jul 28, 2025

Some Linux scripts

Shell 1,511 1,116 Updated Jul 13, 2025

Unix, R and python tools for genomics and data science

Shell 1,330 362 Updated Aug 25, 2025

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

Shell 994 193 Updated Jun 24, 2025

Cytoscape: an open source platform for network analysis and visualization

Shell 661 149 Updated Sep 27, 2025

iKoolProxy是基于KoolProxyR 重新整理的。 需要先安装koolproxy.ipk,再luci,记得一定要重启路由器!

Shell 501 170 Updated Mar 14, 2025

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

Shell 328 287 Updated Dec 21, 2018

Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.

Shell 220 16 Updated Oct 21, 2025

🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

Shell 195 46 Updated Nov 12, 2020

Alignment viewer for linux terminal

Shell 124 7 Updated Sep 13, 2025

Guides, best practices, templates, and discussions for the WHO open source community

Shell 89 7 Updated Oct 7, 2025

Global phylogenies of SARS-CoV-2 sequences

Shell 85 23 Updated Oct 24, 2023

Claude Code skills to download sources (articles, PDFs, YouTube video transcripts)

Shell 74 12 Updated Oct 17, 2025

基于rstudio、code-server、jupyter-lab的dockerfile,用于快速搭建数据分析环境。

Shell 57 27 Updated Nov 14, 2022

Materials for a class on reproducible research with R, Rstudio, and GitHub

Shell 47 91 Updated Dec 9, 2014

Workshop on Genomics - Genomics Adventure

Shell 42 10 Updated Jun 11, 2025

examples of using slurm in life sciences workflows using posix file systems and object storage

Shell 41 14 Updated May 29, 2024

luci-app-koolproxy modified

Shell 27 19 Updated Aug 2, 2019

This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.

Shell 18 6 Updated Oct 12, 2021

Joplin cleaner for file system synchronise

Shell 15 1 Updated Jun 26, 2021

Pipeline for metagenomic community analysis using DNA isolated from virus-like particles

Shell 13 8 Updated Mar 21, 2020

A conda-smithy repository for ambertools.

Shell 11 15 Updated Feb 26, 2025

Input files and scripts related to our study entitled "Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework" (Dellicour et al. 2020, Nature Commun.)

Shell 10 1 Updated Oct 27, 2024

Automate the creation of high quality research papers in latex. Powered by Swarms 🤖

Shell 9 4 Updated Nov 3, 2025

VIPER is a user-friendly software for assembling and identifying viral genomes (currently SARS-CoV-2, Dengue, and Influenza), from Illumina sequencing data generated through genomic surveillance.

Shell 7 Updated Jun 19, 2024

Automating AI Research at an OpenAI Level to accelerate us to the singularity. Keep it secret but agents are better at better at building agents than humans are!

Shell 7 3 Updated Nov 3, 2025
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