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7 results for source starred repositories written in Jupyter Notebook
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A Haskell kernel for the Jupyter project.

Jupyter Notebook 2,642 264 Updated Nov 6, 2025

A toolkit to learn how to model and interpret regulatory sequence data using deep learning.

Jupyter Notebook 263 68 Updated Aug 1, 2023

Mapping out the coarse-grained connectivity structures of complex manifolds.

Jupyter Notebook 230 33 Updated May 23, 2020

Contrastive PCA

Jupyter Notebook 228 53 Updated Oct 7, 2025

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

Jupyter Notebook 177 51 Updated Dec 18, 2021

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

Jupyter Notebook 27 9 Updated May 21, 2018

Align sequences and then parse features.

Jupyter Notebook 17 10 Updated Oct 24, 2025