Python Classes Without Boilerplate

Composable custom class converters for attrs, dataclasses and friends.

Strong type constraints for Scala

A test framework that runs everything in parallel.

Analysis of DNA double-strand break (DSB) repair, especially as by homologous recombination (HR)

Visualisation (in `napari`) of nuclei from looptrace

Visualisation (in `napari`) of locus-specific spots from looptrace

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

Read and write ImageJ ROI format.

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

general GERlich group uTILitieS

Finding FISH spots

Build numpy-style docstrings programmatically and apply them using a decorator.

streaming data parsing and transformation library

Cats Instances For Scalacheck

Flexible law checking for Scala

CSV Reader/Writer for Scala

uPickle: a simple, fast, dependency-free JSON & Binary (MessagePack) serialization library for Scala

Python dependency checker

Breeze is/was a numerical processing library for Scala.

Read and write Parquet in Scala. Use Scala classes as schema. No need to start a cluster.

Maintainable configuration files

scalac options for the enlightened

Expressive types for Spark.

Scoverage Scala Code Coverage Core Libs

Implementation of the eight queens problem in Scala

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

The Scala 3 compiler, also known as Dotty.

This repository contains scripts relating to analyzing vcf files