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A network filesystem client to connect to SSH servers
MMseqs2: ultra fast and sensitive search and clustering suite
De novo assembler for single molecule sequencing reads using repeat graphs
Official home of genome aligner based upon notion of Cactus graphs
lumpy: a general probabilistic framework for structural variant discovery
Next generation sequencing reads de novo assembler.
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
Detect and visualize target mutations by scanning FastQ files directly
Match up paired end fastq files quickly and efficiently.
A fast lossless FASTQ compressor with ultra-high compression ratio
💥 Quickly calculate and visualize sequence coverage in alignment files
STITCH - Sequencing To Imputation Through Constructing Haplotypes
ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.
Generate unique KMERs for every contig in a FASTA file
To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity…
CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially for NIPT data
Toolkit for automated and rapid discovery of structural variants
bioGUI provides install modules for bioinformatic software for users and allows developers to script a GUI for their applications.
VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
adaptive genome assembly using nanopore sequencing