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16 stars written in Java
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Android application powering the mirror in my house

Java 7,828 655 Updated May 28, 2023

If you fork this then you can say you forked a potato.

Java 784 2,675 Updated Nov 21, 2024

Java utilities for Bioinformatics

Java 519 134 Updated Mar 25, 2026

Implementations of a data structure with false negatives but no false positives.

Java 364 31 Updated Dec 19, 2023

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

Java 249 108 Updated Feb 11, 2021

Text Only Genome Viewer!

Java 234 17 Updated Apr 4, 2026

RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s

Java 60 30 Updated Dec 21, 2022

CRAM format specification and java API for read data.

Java 59 21 Updated Oct 2, 2018

CGView is a Java package for generating high-quality, zoomable maps of circular genomes.

Java 53 18 Updated Mar 2, 2026

My java Sandbox

Java 34 19 Updated Apr 1, 2026

Genomic sequence aligner

Java 33 Updated Mar 12, 2026

Streaming assembly for MinION data

Java 25 4 Updated Dec 16, 2023

MotionRugs: Visualizing Collective Trends in Space and Time

Java 22 1 Updated Oct 23, 2018

Socrates: Identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads

Java 6 6 Updated Sep 15, 2015

A Viral detection tool from High-Throughput Sequencing (HTS) data

Java 5 3 Updated Mar 6, 2020

Generate sequence features for viral sequences: codon, codon pair, nucleotide, dinucleotide biases

Java 3 Updated Jan 24, 2020