🎓 A collection of interactive courses for the swirl R package.

Statistical Rethinking course and book package

Rmd source files for the HarvardX series PH525x

📍 Repel overlapping text labels away from each other in your ggplot2 figures.

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …

🌈 Interactive analysis of metagenomics data

Interactive Heat Maps for R Using plotly

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

A D3.js-based heatmap htmlwidget for R

Genome data visualizations

Curated Metagenomic Data of the Human Microbiome

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

Species occurrence data toolkit for R

Bayesian inference of ancestral dates on bacterial phylogenetic trees

Programmatically interact with the GISAID database.

Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2

Reconstruction of transmission trees using genomic data

Statistical analysis for sparse high-throughput sequencing

Convenient access to the OpenFDA API

Wrapper to a number of SNP web APIs

An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences

Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data

Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes

PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium

Analysis of host repertoire evolution in Pieridae butterflies

Extended demonstrations of the phyloseq package

Introduction to the dplyr data manipulation package