This reading list is centered around the practical application of linear dynamical systems models to predict neural data
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Dec 1, 2021 - Shell
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neuroscience
Here are 27 public repositories matching this topic...
Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM based iron concentrations from subcortical and cortical brain regions and evaluating the quality of QSM data using SNR measures and assessment of outlier regions on phase images.
pipeline neuroscience mri software neuroimaging aging qsm quantitative-susceptibility-mapping brain-iron
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Dec 11, 2023 - Shell
Generate a package-manager-friendly mouse brain atlases collection.
linux packaging neuroscience gentoo mri portage 3d-printing brain-imaging package-management mouse-brain-mri
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Aug 4, 2023 - Shell
Data and tools from the publication "Evolution of Cortical Geometry and its Link to Function, Behaviour and Ecology" by Schwartz et al. for mapping values defined on cortical surfaces between species based on their phylogenetic relationship
geometry evolution morphology neuroscience neuroimaging surface neuroimaging-data neuroscience-methods
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Feb 3, 2025 - Shell
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Jun 12, 2018 - Shell
A Python distribution for neuroscience based on conda 🧠🐍
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Feb 21, 2025 - Shell
A modified FSL version for use with Slurm
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Mar 14, 2018 - Shell
Scripts related to "Longitudinal changes of ADHD symptoms in association with white matter microstructure: A tract-specific fixel-based analysis"
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Jul 17, 2023 - Shell
A sample neuroimaging pipeline for the fMRI data collected by the Aging Brain Cohort.
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May 10, 2023 - Shell
The idea behind this website is to make available all the resources I have gathered/created over the years make other people's life easier.
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Jan 13, 2024 - Shell
Scripts related to "White Matter Microstructure in Attention-Deficit/Hyperactivity Disorder: A Systematic Tractography Study in 654 Individuals"
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Jul 17, 2023 - Shell
Pipeline for Cortical and Subcortical SC and FC
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Nov 6, 2025 - Shell
Common Docker Image for the Dosenbach and Greene Labs
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Apr 16, 2018 - Shell
Scripts related to "Associations between attention-deficit hyperactivity disorder (ADHD) symptom remission and white matter microstructure: A longitudinal analysis"
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Jul 17, 2023 - Shell
Pipeline computing volumes statistics for different brain lobes according to a atlas.
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May 21, 2020 - Shell
Shell scripts pipelines to create DTI templates
neuroscience shell-script brain image-registration diffusion-mri magnetic-resonance-imaging neuroscience-methods brain-template dti-template
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Jun 29, 2025 - Shell
Scripts and pipeline for the handling of scripts from DICOMS to 4DFP and then analysis.
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Jul 11, 2019 - Shell
A simple script to deface (with use of fsl_deface) multiple T1/T2-weighetned files prepared according to the BIDS standard.
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Mar 3, 2023 - Shell
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