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Stars
A library that provides an embeddable, persistent key-value store for fast storage.
A cross-platform, reimplementation of Notepad++
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Accelerated BLAST compatible local sequence aligner.
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Graph-based alignment (Hierarchical Graph FM index)
Transcript assembly and quantification for RNA-Seq
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
Structural variant and indel caller for mapped sequencing data
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
Strelka2 germline and somatic small variant caller
期刊分区查询小工具，包括中科院分区表升级版（2025、2023、2022）及国际期刊预警名单（2025、2024、2023、2021、2020）、JCR（2023、2022、2021、2020）、CCF推荐国际会议和期刊目录（2022）、计算领域高质量科技期刊分级目录（2022）。
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and …
Ultra-fast preprocessing and quality control for long-read sequencing data
Population-scale genotyping using pangenome graphs
The new source code of the LinearFold, linear-time prediction for RNA secondary structures
Rare variant test software for next generation sequencing data
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
Genome mapping and spliced alignment of cDNA or amino acid sequences
An R package for performing STAAR procedure in whole-genome sequencing studies