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10 stars written in Perl
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Trinity RNA-Seq de novo transcriptome assembly

Perl 887 320 Updated Feb 7, 2025

TransDecoder source

Perl 304 64 Updated Mar 22, 2026

Discovering known and novel miRNAs from small RNA sequencing data

Perl 159 54 Updated Dec 11, 2025

Application of pan-genome for population

Perl 117 11 Updated Oct 26, 2025

Identifying genome-wide translated open reading frames using ribosome profiling

Perl 25 9 Updated May 30, 2023

Genotyping of segregating mobile elements insertions

Perl 19 1 Updated Jul 29, 2021

ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposable elements (TEs) in the human genome using next-generation s…

Perl 13 5 Updated Jan 10, 2024

FRAMA: From RNA-seq data to annotated mRNA assemblies

Perl 12 6 Updated Sep 28, 2018
Perl 4 Updated Feb 21, 2024
Perl 3 1 Updated Aug 2, 2019