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f.k.a. Awesome ChatGPT Prompts. Share, discover, and collect prompts from the community. Free and open source — self-host for your organization with complete privacy.
Official repo for the #tidytuesday project
Convert PDF to HTML without losing text or format.
🌎 machine learning tutorials (mainly in Python3)
Powerful and highly extensible command-line based document and bibliography manager.
🦖 ClawBio — The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.
Interpretation and visualization of microbiome charts
Collections of library structure and sequence of popular single cell genomic methods
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial data in an easy and efficient way.
A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
Unified access to several second-generation deconvolution methods
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
Clone Calling from Visium Spatial Transcriptomics of Cancer samples