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Starred repositories

6 stars written in Java
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qupath / qupath

QuPath - Open-source bioimage analysis for research

Java 1,262 321 Updated Dec 11, 2025

miso-lims / miso-lims

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PreibischLab / STIM

Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.

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Single Cell Expression Atlas web application

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