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Starred repositories

7 stars written in Java
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booklore-app / booklore

BookLore: A self-hosted, multi-user digital library with smart shelves, auto metadata, Kobo & KOReader sync, BookDrop imports, OPDS support, and a built-in reader for EPUB, PDF, and comics.

Java 9,861 518 Updated Feb 8, 2026

qupath / qupath

QuPath - Open-source bioimage analysis for research

Java 1,290 328 Updated Feb 5, 2026

miso-lims / miso-lims

MISO: An open-source LIMS for NGS sequencing centres

Java 290 125 Updated Feb 9, 2026

mzmine / mzmine

mzmine source code repository

Java 256 153 Updated Feb 9, 2026

nolanlab / CODEX

Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation

Java 52 12 Updated May 20, 2022

PreibischLab / STIM

Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.

Java 30 1 Updated May 27, 2025

ebi-gene-expression-group / atlas-web-single-cell

Single Cell Expression Atlas web application

Java 6 5 Updated Jan 20, 2026

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