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A curated list of awesome R packages, frameworks and software.
Statistical Rethinking course winter 2022
Rmd source files for the HarvardX series PH525x
Color palette package in R inspired by works at the Metropolitan Museum of Art in New York
GPT RStudio addins that enable GPT assisted coding, writing & analysis
NicheNet: predict active ligand-target links between interacting cells
Fast, sensitive and accurate integration of single-cell data with Harmony
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Fast Disk-Based Parallelized Data Manipulation Framework for Larger-than-RAM Data
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
High dimensional weighted gene co-expression network analysis
A package to help convert different single-cell data formats to each other
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
R package for integrating and analyzing multiple single-cell datasets
R package implementation of Milo for testing for differential abundance in KNN graphs
R toolkit for the analysis of single-cell chromatin data