Stars
Raw nanopore signal mapper that enables real-time targeted sequencing
Reliable Allreduce and Broadcast Interface for distributed machine learning
Transcript assembly and quantification for RNA-Seq
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
RAxML Next Generation: faster, easier-to-use and more flexible
C++ API & command-line toolkit for working with BAM data
Fast genome and metagenome distance estimation using MinHash
Turning geospatial polygons into regular or hexagonal grids. For other similar functionality see the tilemaps package https://github.com/kaerosen/tilemaps
LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone.
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
Pixel-art map visualizer for Minecraft. Maps are drawn from an isometric perspective.
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which wil…
SortMeRNA: next-generation sequence filtering and alignment tool