fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

DataFrame API written in Nim, enabling fast out-of-core data processing

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

find large indels (in the blind spot between GATK/freebayes and SV callers)

Readability enhancement tool for bioinformatics data file format

LoFreq Version 3

Bloom filter implementation in Nimrod

Fragment-Aware Local Assembly for Short-reads