Influenza genome analysis Nextflow workflow

generating hardware accelerators for pangenomic graph queries

Wasm powered Jupyter running in the browser 💡

Official release of the ProGen models

Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on a laptop within a few hours.

Approximate nearest neighbour search for microbial genomes based on hash metric

hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

WebAssembly modules for genomics

Rust binding for WFA2-lib

Very fast ONT basecaller (forked from compbio)

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

BioThings API framework - Making high-performance API for biological annotation data

repository-based plasmid design

Microbiome analysis

API service for EBI's BIGSI

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

a ruby-to-pyc compiler

Map of Sonic.net fiber deployment in San Francisco generated from public records

A repository for the lessons and notebooks used for Binder tutorials

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

Python package to study microbial communities using metabolic modeling.

Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.

Hyper LogLog (native and sliding) cardinality counters

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

HMM databases for microbial metabolic genes of environmental/biogeochemical importance.

The ARTIC fieldbioinformatics pipeline

adapter trimmer for Oxford Nanopore reads

Visualization of the pan-genome output by panX