Implement a ChatGPT-like LLM in PyTorch from scratch, step by step

Python Data Science Handbook: full text in Jupyter Notebooks

A game theoretic approach to explain the output of any machine learning model.

Example 📓 Jupyter notebooks that demonstrate how to build, train, and deploy machine learning models using 🧠 Amazon SageMaker.

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

scripts and notebooks from sanbomics

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

Practical guidance for time series analysis in Python

TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design

dbSNP

Code for the book "Software Engineering for Data Scientists"

xHLA: Fast and accurate HLA typing from short read sequence data

All materials for bioimage analysis workshop at Kyoto and Taipei, Dec 2023 and Jan 2024