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Pull requests list

Conversion of Tutorial from LaTeX to RST for Sphinx Documentation
#4371 by peterjc was merged Jan 4, 2024 Loading…
3 tasks done
Describe the alignment property of MultipleSeqAlignment
#4370 by mdehoon was merged Jul 21, 2023 Loading…
3 tasks done
split the alignment chapter
#4369 by mdehoon was merged Jul 21, 2023 Loading…
3 tasks done
Method for codon optimization of sequences
#4368 by crockeraw was merged Aug 22, 2023 Loading…
3 tasks done
add method for codon optimization of sequences
#4367 by crockeraw was closed Jul 20, 2023 Loading…
3 tasks done
Create a new-style Alignment object from a MultipleSeqAlignment object
#4366 by mdehoon was merged Jul 21, 2023 Loading…
3 tasks done
Close connections to SQLite files before deleting them
#4365 by peterjc was merged Jul 20, 2023 Loading…
3 tasks done
Fix minor style issues flagged by latest flake8-bugbear
#4364 by peterjc was merged Jul 24, 2023 Loading…
3 tasks done
Explicitly close MafIO index connection to SQLite DB
#4363 by peterjc was closed Jul 19, 2023 Loading…
3 tasks done
Bio.motifs: add relative entropy to the Motif class
#4362 by mdehoon was merged Jul 19, 2023 Loading…
3 tasks done
Bio.motifs format
#4359 by mdehoon was merged Jul 14, 2023 Loading…
3 tasks done
Motif getindex
#4358 by mdehoon was merged Jul 14, 2023 Loading…
3 tasks done
Allow string-like objects as filenames in SeqIO
#4357 by michaelfm1211 was merged Jul 22, 2023 Loading…
2 of 3 tasks
Fix for #4354
#4355 by mdehoon was merged Jul 12, 2023 Loading…
3 tasks done
More latex tweaks
#4352 by peterjc was merged Jul 12, 2023 Loading…
3 tasks done
Bio.Align alignment object frequencies
#4351 by mdehoon was merged Jul 11, 2023 Loading…
3 tasks done
Update test_AlignIO_ClustalIO.py
#4350 by mdehoon was merged Jul 10, 2023 Loading…
3 tasks done
[pre-commit.ci] autoupdate
#4347 by pre-commit-ci bot was merged Jul 4, 2023 Loading…
unitest assertEquals to assertEqual
#4345 by sagitter was merged Jul 1, 2023 Loading…
3 tasks done
Update hhr.py to consider incomplete confidence
#4344 by whatever60 was merged Jul 1, 2023 Loading…
3 tasks done
Deprecate Bio.LogisticRegression & Bio.kNN modules
#4341 by peterjc was merged Jun 30, 2023 Loading…
3 tasks done
Deprecate Bio.motifs.Instances
#4340 by mdehoon was merged Jul 5, 2023 Loading…
3 tasks done
Update pairwise2.py
#4339 by pippo1990 was closed Jun 27, 2023 Loading…
2 of 3 tasks
Test UniProt parsing Tutorial example (offline)
#4338 by peterjc was merged Jul 11, 2023 Loading…
3 tasks done
Latex tweaks
#4336 by peterjc was merged Jun 19, 2023 Loading…
3 tasks done
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