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Pull requests list

StructureAlignment with Alignment objects
#4094 by mdehoon was merged Sep 28, 2022 Loading…
3 tasks done
subclass Confidence from float and PhyloElement
#4091 by mdehoon was merged Sep 28, 2022 Loading…
3 tasks done
add operations to stockholm
#4088 by mdehoon was merged Sep 23, 2022 Loading…
3 tasks done
use 0.5 for missing codons
#4085 by mdehoon was merged Sep 30, 2022 Loading…
3 tasks done
add isupper, islower to SeqRecord
#4083 by mdehoon was merged Sep 30, 2022 Loading…
3 tasks done
Alignment format
#4082 by mdehoon was merged Sep 18, 2022 Loading…
3 tasks done
Rename Bio.SeqFeature.FeatureLocation to SimpleLocation
#4076 by peterjc was merged Oct 7, 2022 Loading…
3 tasks done
Add PaqCI to Restriction Dictionary
#4074 by jacobkimmel was closed Sep 8, 2022 Loading…
deprecate title2ids
#4072 by mdehoon was merged Sep 6, 2022 Loading…
3 tasks done
deprecate Bio.Blast.ParseBlastTable
#4070 by mdehoon was merged Sep 6, 2022 Loading…
3 tasks done
Fix Alignment.__repr__ if coordinates is None
#4069 by mdehoon was merged Sep 4, 2022 Loading…
3 tasks done
include all BLAST programs in Bio.Align.tabular
#4067 by mdehoon was merged Sep 4, 2022 Loading…
3 tasks done
Bio.Align format
#4066 by mdehoon was merged Sep 2, 2022 Loading…
3 tasks done
add parse, read, write functions to Bio.Align
#4065 by mdehoon was merged Aug 31, 2022 Loading…
3 tasks done
SeqFeature position code cleanup
#4063 by mdehoon was closed Oct 8, 2022 Draft
3 tasks done
GitHub Workflows security hardening
#4062 by sashashura was merged Dec 21, 2023 Loading…
2 of 3 tasks
bigMaf parser
#4060 by mdehoon was merged Aug 29, 2022 Loading…
3 tasks done
bigPsl parser
#4059 by mdehoon was merged Aug 28, 2022 Loading…
3 tasks done
parse extended BED files
#4058 by mdehoon was merged Aug 26, 2022 Loading…
3 tasks done
Bigbed autosql
#4057 by mdehoon was merged Aug 25, 2022 Loading…
3 tasks done
Don't use islower
#4055 by mdehoon was merged Aug 24, 2022 Loading…
3 tasks done
Bio.Cluster: replace float zero comparison
#4054 by mdehoon was closed Aug 24, 2022 Loading…
3 tasks done
remove unnecessary string conversion
#4053 by mdehoon was merged Aug 23, 2022 Loading…
3 tasks done
List data folders under setup.py's packages list
#4051 by peterjc was merged Jan 21, 2025 Loading…
3 tasks done
Updated the Weblogo URL
#4049 by arupgsh was merged Aug 23, 2022 Loading…
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