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Pull requests: biopython/biopython
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Misc small flake8 tweaks, plus adding ruff to the pre-commit setup
#4164
by peterjc
was closed Jan 11, 2023
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3 tasks done
Enforce flake8 E741 ambiguous variable name 'l'
#4163
by peterjc
was merged Nov 15, 2022
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3 tasks done
Improved parsing of GN in the SwissProt parser, take 2
#4162
by mdehoon
was merged Nov 15, 2022
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3 tasks done
Avoid variable name masking built-in dict
#4161
by peterjc
was merged Nov 14, 2022
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3 tasks done
Minor style change from trying ruff as a flake8 alternative
#4159
by peterjc
was merged Nov 14, 2022
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3 tasks done
Clearer error when left/right parentheses disagree
#4152
by peterjc
was merged Nov 18, 2022
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3 tasks done
Add optional authentication for qblast, and email and tool variables.
#4149
by mdehoon
was merged Nov 11, 2022
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3 tasks done
Support EMBOSS needle/water alignments to the reverse strand
#4142
by mdehoon
was merged Oct 23, 2022
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3 tasks done
In Bio.Align bigpsl parser, use features to annotate CDS
#4141
by mdehoon
was merged Oct 21, 2022
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3 tasks done
raise and error if an invalid Newick unquoted label name is found while parsing the tree
#4139
by amatria
was closed Apr 13, 2025
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3 tasks done
Simplify calculation of CodonAdaptationIndex and deal with zero-devision error. #2169
#4136
by mdehoon
was merged Oct 16, 2022
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2 of 3 tasks
correct the docstring of the kmedoids function
#4135
by mdehoon
was merged Oct 16, 2022
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3 tasks done
Typo fix in GenBank Feature class documentation
#4129
by srom
was merged Oct 9, 2022
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2 tasks done
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