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Pull requests: biopython/biopython
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Residue 4BF should map to PHE instead of TYR
#4218
by tommycarstensen
was merged Jan 24, 2023
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3 tasks done
Update pre-commit tools including flake8
#4212
by peterjc
was merged Jan 12, 2023
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3 tasks done
Special case single entry GenBank lineage
#4211
by peterjc
was merged Apr 23, 2023
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3 tasks done
print alignments when the sequence is unknown
#4206
by mdehoon
was merged Dec 30, 2022
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3 tasks done
Fix MMCIFParser warning and IUPAC extended one letter codes
#4202
by Truman-Xu
was closed Jan 3, 2025
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3 tasks done
Fix MMCIF Parser and Protein 3to1 dict
#4201
by Truman-Xu
was closed Dec 15, 2022
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3 tasks done
Allow PDBIO to write to an open IO object without closing it
#4200
by jgreener64
was merged Dec 15, 2022
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Generalize Bio.CAPS to accept both Alignment and MultipleSeqAlignment objects
#4195
by mdehoon
was merged Dec 11, 2022
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3 tasks done
fix
Bio.Align._aligners for Python 3.12
#4194
by mdehoon
was merged Dec 10, 2022
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3 tasks done
Bio.Phylo support for Alignment and MultipleSeqAlignment
#4192
by mdehoon
was merged Feb 9, 2023
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3 tasks done
Enable Seq and plain string objects for Bio.Align writers
#4187
by mdehoon
was merged Dec 4, 2022
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3 tasks done
fix NEWS to include the change in alignment printing in release 1.80
#4184
by mdehoon
was merged Nov 30, 2022
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3 tasks done
Enhance Entrez docstring with information about the new PubMed web.
#4180
by aCampello
was closed Nov 23, 2022
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2 of 3 tasks
add an alignment property to the Phylogeny class
#4178
by mdehoon
was merged Dec 5, 2022
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3 tasks done
remove deprecated argument from Bio.Phylo.BaseTree
#4172
by mdehoon
was merged Nov 19, 2022
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3 tasks done
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