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bactopia / bactopia

A flexible pipeline for complete analysis of bacterial genomes

Nextflow 480 77 Updated Nov 4, 2025

nf-core / scrnaseq

Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

Nextflow 298 204 Updated Oct 30, 2025

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